Glyma07g09990 - SoyBase

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Report for Sequence Feature Glyma07g09990

Feature Type:	gene_model
Chromosome:	Gm07
Start:	8394303
stop:	8396819
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g09990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G62830	AT	Annotation by Michelle Graham. TAIR10: LSD1-like 1 \| chr1:23264638-23267172 REVERSE LENGTH=844	SoyBase	E_val: 0	ISS
GO:0016575	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone deacetylation	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0051568	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K4 methylation	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008131	GO-mf	Annotation by Michelle Graham. GO Molecular Function: primary amine oxidase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0029	KOG	Amine oxidase	JGI		ISS
PTHR10742	Panther	AMINE OXIDASE	JGI		ISS
PTHR10742:SF30	Panther	AMINE OXIDASE	JGI		ISS
PF01593	PFAM	Flavin containing amine oxidoreductase	JGI		ISS
PF01946	PFAM	Thi4 family	JGI		ISS
PF04433	PFAM	SWIRM domain	JGI		ISS
UniRef100_B9SUY7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Flavin-containing amine oxidase domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SUY7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338F27	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338F27 related cluster n=1 Tax=unknown RepID=UPI0002338F27	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g09990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g09990

Paralog	Evidence	Comments
Glyma09g31770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g09990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g090100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g09990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g09990

Limit To All Plant Sequences

>Glyma07g09990.1   sequence type=CDS   gene model=Glyma07g09990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAACCCCCGTCACCACCACCACCACCACCACCGCAATCCGTTTCACCGGAAAACGACGTCGCAATGTCCCCCCATAACCTCGACCTCCAAAACTCCTCCGAAGACCCAGACTCCTCCTTCCCCACCCAAACGACACCCGAGCCCGCCGTTCCAGACTCCCCGGACTCCACCACGACCCGACCCGACCCGAATCCACCTCCGCGGAAACGACGCCGTCGAAAGAAGTTCTTCACGGAACTCACCACCGGGACCTCTACGCGCCGAAACGACGTCGCCAAGGACTGCGACGTGGAAGCCCTAATCGCGATCTCGGTAGGGTTCCCCGTGGACTCTTTAACGGAAGAAGAGATCGAAGCAAACGTGGTTTCCACCGTCGGAGGCTCCGAACAATCCAACTACATCGTCGTCCGAAACCACATATTGGCGCGTTGGCGGTCCAACGTTTCGGTCTGGTTAACCCATGACCAGGCCCTCCGGTCGATCCGGTCCGAACACAAGGGTTTGGTCGAAACCGCTTACCGGTTCCTGCTGGAGCACGGTTACATAAACTTCGGCCTCGCGCATGAGATCAAAACCCTAAAGCAGAAACCTTTCGATGGGTCCTACCGAGGAACGGTGATTGTGATCGGTGCCGGGTTCGCGGGTTTGGTTGCGGCGAGACAATTGGTGTTTATGGGGTTTAAAGTTGTGATTTTGGAAGGTAGGACCCGACCCGGTGGGAGGGTTAAGACTAAGAAGATGAGTGGTGATGGGGTTGAGGCTGCAGCGGATTTCGGTGGGAGTGTCCTCACTGGAATAAATGGGAACCCTCTTGGGGTTCTTGCTAGGCAATTGGGTTTGCCTTTGCATAAGGTGAGGGATATTTGCCCTCTCTATTTGCCTGATGGGAGGAGTGTTGACTCTGAGGTTGACTCTAGGGTTGAGGTTTCGTTTAACAAGTTGTTGGAGAGGGTTTGTAAGCTGAGACAGGCGATGATCGAGGAGGTGAAGTCGGTGGACGTGCCGTTGGGGACAGCATTGGAGGCATTCCGAAGGGTTTATAAGGTGGCTGAGGATAAGGAGGAGAGGATGTTGCTGAATTGGCACCTTGCGAATTTGGAGACTGTAGAGTGTGTGAAGTATGGGAGTGATGGGGTGCTGGTTTGTGCTGCTGGGCAGGAGTTTAGGGGGGACGTGGCGCTTTGTACCGTGCCATTGGGGGTGCTAAAGAAGGGGGATATTGAGTTTGTGCCTGAGCTTCCTCAGAGGAAGAAGGATGCTATTCATAGGTTGGGGTTTGGGTTGTTGAACAAGGTTGCAATATTGTTTCCTTATAATTTCTGGGGTGGGGACATTGACACGTTTGGTCATTTGACTGAGGATTTGAGTATGAGAGGGGAGTTTTTTCTGTTCTATAGCTACTCCTCGGTGTCTGGGGGCCCGCTTCTGGTTGCGCTTGTTGCTGGGGAGGCTGCGATTAGGTTTGAAATGATGTCGCCGGTGGAGTCTGTGAAGAGGGTGTTGGACATTCTGAAGGATATTTTTAATCCAAAGGGGATTGTTGTTCCGGATCCAGTTCAGGCGGTTTGTACTCGGTGGGGGAAGGATCACTTTGCATATGGATCTTACTCTTATGTTGCGGTTGGATCTTCAGGAGATGATTACGATATTCTTGCAGAGAGTGTTGGAGATGGGAGAGTGTTCTTCGCTGGAGAGGCAACTAGCAAACAGTATCCTGCGACTATGCACGGCGCGTTCCTCAGCGGAATGAGAGAGGCTGCAAACATTTTGAGAGTGGCAAAGAGGAGGTCTTCGATGACTATTGATACAACAAAAAGTGTCAACCAGGAGAATGATGATTTGAACAAATTATTTGTGAAACCTGATCTGACATTTGGGAGCTTCTCTGCCTTGTTTGATCTAAATTTGAATGATCATGATTCCAGTTCATTACTGAGGGTTAAAATTGGAGGAGTTGTGTTGGACTCTGGCAGTCTTTATCTTTATGCCTGGCTTTCAAAGAAGCGGGTCATTGAGTTGAGTCAGGTGGAGGGAGATGAGAACAGGATGAGAATGTTAAACCGCAATTTTGGGGTGAGTTTGGTTGGGAGGAAGGGTTTAAGTAGTGCTGCTGAATCTCTTATTGCTAACATAAAACTTTCTAGACCCAACTTTAATGAAACGGAAAATGGCCTTATGGCTGAGAAGGAAAATTCTTAG

Predicted protein sequences of Glyma07g09990

Limit To All Plant Sequences

>Glyma07g09990.1   sequence type=predicted peptide   gene model=Glyma07g09990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEPPSPPPPPPPQSVSPENDVAMSPHNLDLQNSSEDPDSSFPTQTTPEPAVPDSPDSTTTRPDPNPPPRKRRRRKKFFTELTTGTSTRRNDVAKDCDVEALIAISVGFPVDSLTEEEIEANVVSTVGGSEQSNYIVVRNHILARWRSNVSVWLTHDQALRSIRSEHKGLVETAYRFLLEHGYINFGLAHEIKTLKQKPFDGSYRGTVIVIGAGFAGLVAARQLVFMGFKVVILEGRTRPGGRVKTKKMSGDGVEAAADFGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPDGRSVDSEVDSRVEVSFNKLLERVCKLRQAMIEEVKSVDVPLGTALEAFRRVYKVAEDKEERMLLNWHLANLETVECVKYGSDGVLVCAAGQEFRGDVALCTVPLGVLKKGDIEFVPELPQRKKDAIHRLGFGLLNKVAILFPYNFWGGDIDTFGHLTEDLSMRGEFFLFYSYSSVSGGPLLVALVAGEAAIRFEMMSPVESVKRVLDILKDIFNPKGIVVPDPVQAVCTRWGKDHFAYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATSKQYPATMHGAFLSGMREAANILRVAKRRSSMTIDTTKSVNQENDDLNKLFVKPDLTFGSFSALFDLNLNDHDSSSLLRVKIGGVVLDSGSLYLYAWLSKKRVIELSQVEGDENRMRMLNRNFGVSLVGRKGLSSAAESLIANIKLSRPNFNETENGLMAEKENS*

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